MediaWiki API result

{
    "batchcomplete": "",
    "warnings": {
        "main": {
            "*": "Subscribe to the mediawiki-api-announce mailing list at <https://lists.wikimedia.org/postorius/lists/mediawiki-api-announce.lists.wikimedia.org/> for notice of API deprecations and breaking changes."
        },
        "revisions": {
            "*": "Because \"rvslots\" was not specified, a legacy format has been used for the output. This format is deprecated, and in the future the new format will always be used."
        }
    },
    "query": {
        "pages": [
            {
                "ns": 0,
                "title": "API",
                "missing": ""
            },
            {
                "pageid": 1,
                "ns": 0,
                "title": "Main Page",
                "revisions": [
                    {
                        "user": "Aaron",
                        "timestamp": "2020-07-17T16:53:57Z",
                        "contentformat": "text/x-wiki",
                        "contentmodel": "wikitext",
                        "comment": "",
                        "*": "News! See our [[https://doi.org/10.1107/S2059798318009191 new paper]]!  This paper shows current best practices using ''cctbx.xfel'' with ''DIALS'' for serial crystallographic data.  Also see the [https://github.com/phyy-nx/dials_refinement_brewster2018/wiki companion set of tutorials].\n\nNews! See our [[http://cci.lbl.gov/publications/download/CCN_2019_p22_Brewster.pdf newsletter article]] that describes the XFEL GUI, an interactive program for handling large XFEL datasets.\n\n= Open-source tools for serial crystallographic data processing =\n\n''cctbx.xfel'' is a suite of software tools designed to process diffraction data from serial femtosecond crystallography (SFX) measurements at an X-ray free-electron laser (XFEL) or a synchrotron.  Built on the Computational Crystallographic Toolbox ([http://cctbx.sourceforge.net ''cctbx'']), the same toolbox on which [http://www.phenix-online.org ''PHENIX''], [http://dials.github.io DIALS], [http://adder.lbl.gov/labelit ''LABELIT''], and post-refinement and merging program, [http://viper.lbl.gov/cctbx.xfel/index.php/Cctbx.prime ''PRIME''] are built, it enables the user to solve difficult problems relating to processing serial crystallographic data.  The programs and modules provided by ''cctbx.xfel'' can reduce a large set of still diffraction images recorded at Stanford\u2019s Linac Coherent Light Source ([http://lcls.slac.stanford.edu LCLS]), [http://sacla.xfel.jp SACLA], the [https://www.xfel.eu/ European XFEL], or a synchrotron, to a single MTZ file containing merged reflection intensities suitable for structure solution.\n\n== ''cctbx.xfel'' resources ==\n\nThe tutorials on this wiki provide detailed instructions for indexing and integrating still diffraction images extracted from the raw data streams recorded at the LCLS, including pre-processing steps such as dark pedestal generation and refinement of the detector geometry of the Cornell\u2013SLAC pixel array detectors (CSPAD) in use at the CXI and XPP end stations.  The tutorials also cover tools to efficiently leverage the LCLS computing cluster to process the thousands to millions of diffraction images that can be recorded in a short time.  Finally, processing approaches for data collection at non-LCLS sources are also provided.\n\n* [[Overview]] to the system architecture at LCLS and real-time progress monitoring of data processing\n* Installation: there are two ways to get ''cctbx.xfel'':\n** ''cctbx.xfel'' is installed for general use at SLAC.  To start using an existing installation, [[Using the pre-built cctbx at LCLS|simply source the current build]]. \n** [https://dials.github.io/installation.html Download] a binary bundle of DIALS. Use this option if you will not be processing LCLS data because, for example, if you have serial crystallographic data from a synchrotron.\n** Build a psana/cctbx.xfel build [https://exafel.github.io/docs/psana-cctbx-install from scratch]. Use this option if you want to process LCLS data outside of LCLS or want your own build.\n* [[Tutorials]] on pre-processing, data reduction, and merging. \n* ''[[cctbx.prime]]'': tutorials on post-refinement using PRIME. \n* ''[[IOTA]]'': tutorial on spotfinding optimization using ''IOTA''.\n\nOther related information:\n\n* [[Serial XFEL Crystallography References]]\n* [[Data Processing at SACLA]]\n* [[2017 Tutorials]]. Berkeley Lab Serial Crystallography Workshop, 16-17 Feb 2017.\n* [[Experiment-day guidelines]]: a short, very hands-on set of notes for online monitoring and data-processing using cctbx.xfel.\n* [[File formats]]: for developers, information on file formats ''cctbx.xfel'' uses\n* [[Cppxfel]]: XFEL data processing with the CPPXFEL package from Diamond/Wellcome Trust.\n* [[Ha14 documentation]]: tutorials and support for processing using the [https://doi.org/10.1038/nmeth.2887 Hattne 2014] methods.\n\nThis project is under active development.  For any assistance, please contact the authors."
                    }
                ]
            }
        ]
    }
}